STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC33521.1Hypothetical protein; C414_000010108 identified by Glimmer3 with a raw score of 11.38. Gene function extrapolated from C8J_1542 (CP000814.1) after blastn alignment (97.10 percent identity over a 138 bp alignment). (183 aa)    
Predicted Functional Partners:
EFC33515.1
ABC transporter, permease protein, putative; C414_000010102 identified by Glimmer3 with a raw score of 14.57. Gene function extrapolated from C8J_1548 (CP000814.1) after blastn alignment (93.94 percent identity over a 693 bp alignment).
       0.823
EFC33517.1
Geranyltranstransferase; C414_000010104 identified by Glimmer3 with a raw score of 13.09. Gene function extrapolated from C8J_1546 (CP000814.1) after blastn alignment (91.54 percent identity over a 804 bp alignment); Belongs to the FPP/GGPP synthase family.
       0.818
EFC33518.1
PDZ domain protein; C414_000010105 identified by Glimmer3 with a raw score of 11.66. Gene function extrapolated from CJJ81176_1634 (CP000538.1) after blastn alignment (94.92 percent identity over a 866 bp alignment).
       0.818
EFC33519.1
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
       0.818
murE
UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
       0.818
EFC33522.1
NifU family protein; C414_000010109 identified by Glimmer3 with a raw score of 10.64. Gene function extrapolated from JJD26997_1999 (CP000768.1) after blastn alignment (92.67 percent identity over a 273 bp alignment).
       0.818
EFC33513.1
ABC transporter, periplasmic substrate-binding protein, putative; C414_000010100 identified by Glimmer3 with a raw score of 13.64. Gene function extrapolated from CJE1820 (CP000025.1) after blastn alignment (92.92 percent identity over a 833 bp alignment).
       0.809
EFC33514.1
ABC transporter, ATP-binding protein; C414_000010101 identified by Glimmer3 with a raw score of 15.90. Gene function extrapolated from JJD26997_2007 (CP000768.1) after blastn alignment (94.00 percent identity over a 717 bp alignment).
       0.809
EFC33516.1
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
       0.809
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
       0.552
Your Current Organism:
Campylobacter jejuni 414
NCBI taxonomy Id: 683083
Other names: C. jejuni subsp. jejuni 414, Campylobacter jejuni subsp. jejuni 414, Campylobacter jejuni subsp. jejuni str. 414, Campylobacter jejuni subsp. jejuni strain 414
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.