Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFC33234.1Hypothetical protein; C414_000070002 identified by Glimmer3 with a raw score of 8.24. Gene function extrapolated from C8J_0648 (CP000814.1) after blastn alignment (92.28 percent identity over a 285 bp alignment). (115 aa)    
Predicted Functional Partners:
EFC33233.1
Phage repressor protein, putative; C414_000070001 identified by Glimmer3 with a raw score of 8.35. Gene function extrapolated from C8J_0649 (CP000814.1) after blastn alignment (89.35 percent identity over a 620 bp alignment).
       0.773
EFC33232.1
Hypothetical protein; C414_000070000 identified by Glimmer3 with a raw score of 5.99. A blastn search against coding sequences extracted from AL111168.1, CP000025.1, CP000538.1, CP000768.1, CP000814.1 failed to identify a similar sequence, and so no function could be assigned.
       0.552
Your Current Organism:
Campylobacter jejuni 414
NCBI taxonomy Id: 683083
Other names: C. jejuni subsp. jejuni 414, Campylobacter jejuni subsp. jejuni 414, Campylobacter jejuni subsp. jejuni str. 414, Campylobacter jejuni subsp. jejuni strain 414
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