STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC33083.1Hypothetical protein; C414_000080048 identified by Glimmer3 with a raw score of 10.69. A blastn search against coding sequences extracted from AL111168.1, CP000025.1, CP000538.1, CP000768.1, CP000814.1 failed to identify a similar sequence, and so no function could be assigned. (66 aa)    
Predicted Functional Partners:
EFC33082.1
Bacteriophage DNA transposition protein A, putative; C414_000080047 identified by Glimmer3 with a raw score of 9.90. Gene function extrapolated from CJE0270 (CP000025.1) after blastn alignment (92.80 percent identity over a 236 bp alignment).
       0.773
EFC33084.1
Hypothetical protein; C414_000080049 identified by Glimmer3 with a raw score of 5.72. A blastn search against coding sequences extracted from AL111168.1, CP000025.1, CP000538.1, CP000768.1, CP000814.1 failed to identify a similar sequence, and so no function could be assigned.
       0.524
EFC33079.1
Hypothetical protein; C414_000080044 identified by Glimmer3 with a raw score of 13.37. Gene function extrapolated from CJE0267 (CP000025.1) after blastn alignment (90.00 percent identity over a 170 bp alignment).
       0.440
EFC33080.1
Hypothetical protein; C414_000080045 identified by Glimmer3 with a raw score of 7.09. A blastn search against coding sequences extracted from AL111168.1, CP000025.1, CP000538.1, CP000768.1, CP000814.1 failed to identify a similar sequence, and so no function could be assigned.
       0.440
EFC33081.1
Bacteriophage DNA transposition protein B, putative; C414_000080046 identified by Glimmer3 with a raw score of 11.68. Gene function extrapolated from CJE0269 (CP000025.1) after blastn alignment (90.39 percent identity over a 916 bp alignment).
       0.440
Your Current Organism:
Campylobacter jejuni 414
NCBI taxonomy Id: 683083
Other names: C. jejuni subsp. jejuni 414, Campylobacter jejuni subsp. jejuni 414, Campylobacter jejuni subsp. jejuni str. 414, Campylobacter jejuni subsp. jejuni strain 414
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.