STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC32951.1Hypothetical protein; C414_000160021 identified by Glimmer3 with a raw score of 12.98. A blastn search against coding sequences extracted from AL111168.1, CP000025.1, CP000538.1, CP000768.1, CP000814.1 failed to identify a similar sequence, and so no function could be assigned. (408 aa)    
Predicted Functional Partners:
EFC33059.1
Hypothetical protein; C414_000080024 identified by Glimmer3 with a raw score of 15.28. Gene function extrapolated from CJE0246 (CP000025.1) after blastn alignment (88.81 percent identity over a 974 bp alignment) - for clarity, the original product name 'conserved hypothetical protein' has been renamed.
  
     0.711
EFC32327.1
Hypothetical protein; C414_000270002 identified by Glimmer3 with a raw score of 10.95. Gene function extrapolated from Cj1309c (AL111168.1) after blastn alignment (92.81 percent identity over a 1071 bp alignment). Similar to Cj1309c.
  
     0.700
EFC33065.1
Phage tail protein, putative; C414_000080030 identified by Glimmer3 with a raw score of 19.01. Gene function extrapolated from CJE0252 (CP000025.1) after blastn alignment (93.60 percent identity over a 375 bp alignment).
  
     0.698
EFC33082.1
Bacteriophage DNA transposition protein A, putative; C414_000080047 identified by Glimmer3 with a raw score of 9.90. Gene function extrapolated from CJE0270 (CP000025.1) after blastn alignment (92.80 percent identity over a 236 bp alignment).
  
     0.688
EFC33039.1
Major tail sheath protein; C414_000080004 identified by Glimmer3 with a raw score of 14.26. Gene function extrapolated from CJE0227 (CP000025.1) after blastn alignment (88.88 percent identity over a 881 bp alignment).
 
     0.682
EFC32556.1
Hypothetical protein; C414_000240018 identified by Glimmer3 with a raw score of 6.21. Gene function extrapolated from C8J_0992 (CP000814.1) after blastn alignment (89.42 percent identity over a 586 bp alignment).
 
     0.673
EFC32953.1
Hypothetical protein; C414_000160023 identified by Glimmer3 with a raw score of 12.38. A blastn search against coding sequences extracted from AL111168.1, CP000025.1, CP000538.1, CP000768.1, CP000814.1 failed to identify a similar sequence, and so no function could be assigned.
       0.666
EFC33067.1
Tail protein D, putative; C414_000080032 identified by Glimmer3 with a raw score of 13.36. Gene function extrapolated from CJE0254 (CP000025.1) after blastn alignment (89.91 percent identity over a 347 bp alignment).
  
     0.647
EFC32950.1
Hypothetical protein; C414_000160020 identified by Glimmer3 with a raw score of 14.28. A blastn search against coding sequences extracted from AL111168.1, CP000025.1, CP000538.1, CP000768.1, CP000814.1 failed to identify a similar sequence, and so no function could be assigned.
       0.631
EFC32954.1
Hypothetical protein; C414_000160024 identified by Glimmer3 with a raw score of 11.44. A blastn search against coding sequences extracted from AL111168.1, CP000025.1, CP000538.1, CP000768.1, CP000814.1 failed to identify a similar sequence, and so no function could be assigned.
       0.621
Your Current Organism:
Campylobacter jejuni 414
NCBI taxonomy Id: 683083
Other names: C. jejuni subsp. jejuni 414, Campylobacter jejuni subsp. jejuni 414, Campylobacter jejuni subsp. jejuni str. 414, Campylobacter jejuni subsp. jejuni strain 414
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.