STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC32835.1Hypothetical protein; C414_000220091 identified by Glimmer3 with a raw score of 6.39. Gene function extrapolated from JJD26997_0904 (CP000768.1) after blastn alignment (90.11 percent identity over a 364 bp alignment) - for clarity, the original product name 'conserved hypothetical protein' has been renamed. (150 aa)    
Predicted Functional Partners:
EFC32834.1
Putative periplasmic protein; C414_000220090 identified by Glimmer3 with a raw score of 11.92. Gene function extrapolated from C8J_0845 (CP000814.1) after blastn alignment (93.90 percent identity over a 410 bp alignment).
  
   0.841
EFC33404.1
Cytochrome c oxidase, cbb3-type, subunit I; C414_000020067 identified by Glimmer3 with a raw score of 10.02. Gene function extrapolated from CJJ81176_1482 (CP000538.1) after blastn alignment (96.18 percent identity over a 1467 bp alignment); Belongs to the heme-copper respiratory oxidase family.
  
 
 0.824
EFC33408.1
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
 
 0.760
EFC32836.1
SCO1/SenC family protein; C414_000220092 identified by Glimmer3 with a raw score of 7.13. Gene function extrapolated from JJD26997_0903 (CP000768.1) after blastn alignment (94.33 percent identity over a 141 bp alignment).
  
    0.694
EFC33405.1
Cytochrome c oxidase, cbb3-type, subunit II; C414_000020068 identified by Glimmer3 with a raw score of 13.70. Gene function extrapolated from JJD26997_1835 (CP000768.1) after blastn alignment (96.25 percent identity over a 666 bp alignment).
  
 
 0.527
EFC32791.1
Hypothetical protein; C414_000220046 identified by Glimmer3 with a raw score of 10.28. Gene function extrapolated from CJJ81176_0870 (CP000538.1) after blastn alignment (96.15 percent identity over a 312 bp alignment) - for clarity, the original product name 'conserved hypothetical protein' has been renamed.
  
 
 0.490
Your Current Organism:
Campylobacter jejuni 414
NCBI taxonomy Id: 683083
Other names: C. jejuni subsp. jejuni 414, Campylobacter jejuni subsp. jejuni 414, Campylobacter jejuni subsp. jejuni str. 414, Campylobacter jejuni subsp. jejuni strain 414
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.