STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC32784.1Ser/Thr protein phosphatase family protein; Features C414_000220035, C414_000220036 joined to form C414_000220122 to correct 454 sequencing error (C414_000220035 identified by Glimmer3 with a raw score of 6.21, C414_000220036 identified by Glimmer3 with a raw score of 11.65). Gene function extrapolated from JJD26997_0995 (CP000768.1) after blastn alignment (92.67 percent identity over a 150 bp alignment). (321 aa)    
Predicted Functional Partners:
EFC32785.1
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
       0.818
EFC32783.1
Hypothetical protein; C414_000220034 identified by Glimmer3 with a raw score of 8.84. A blastn search against coding sequences extracted from AL111168.1, CP000025.1, CP000538.1, CP000768.1, CP000814.1 failed to identify a similar sequence, and so no function could be assigned.
       0.773
EFC32782.1
glutamyl-tRNA synthetase; C414_000220033 identified by Glimmer3 with a raw score of 13.51. Gene function extrapolated from C8J_0792 (CP000814.1) after blastn alignment (95.38 percent identity over a 303 bp alignment); Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.553
EFC32875.1
Hypothetical protein; Features C414_000210010, C414_000210011 joined to form C414_000210068 to correct 454 sequencing error (C414_000210010 identified by Glimmer3 with a raw score of 11.83, C414_000210011 identified by Glimmer3 with a raw score of 5.65). Gene function extrapolated from C8J_0711 (CP000814.1) after blastn alignment (95.24 percent identity over a 126 bp alignment).
 
    0.435
Your Current Organism:
Campylobacter jejuni 414
NCBI taxonomy Id: 683083
Other names: C. jejuni subsp. jejuni 414, Campylobacter jejuni subsp. jejuni 414, Campylobacter jejuni subsp. jejuni str. 414, Campylobacter jejuni subsp. jejuni strain 414
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.