STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC32646.1Hypothetical protein; C414_000240115 identified by Glimmer3 with a raw score of 8.47. A blastn search against coding sequences extracted from AL111168.1, CP000025.1, CP000538.1, CP000768.1, CP000814.1 failed to identify a similar sequence, and so no function could be assigned. (383 aa)    
Predicted Functional Partners:
EFC32645.1
Hypothetical protein; C414_000240114 identified by Glimmer3 with a raw score of 10.75. A blastn search against coding sequences extracted from AL111168.1, CP000025.1, CP000538.1, CP000768.1, CP000814.1 failed to identify a similar sequence, and so no function could be assigned.
 
    
0.818
EFC32647.1
Hypothetical protein; C414_000240116 identified by Glimmer3 with a raw score of 9.30. A blastn search against coding sequences extracted from AL111168.1, CP000025.1, CP000538.1, CP000768.1, CP000814.1 failed to identify a similar sequence, and so no function could be assigned.
       0.770
EFC32648.1
Lipooligosaccharide biosynthesis glycosyltransferase; C414_000240117 identified by Glimmer3 with a raw score of 9.25. Gene function extrapolated from CJJ81176_1163 (CP000538.1) after blastn alignment (89.76 percent identity over a 127 bp alignment).
 
    0.676
EFC32649.1
Heptosyltransferase II; C414_000240118 identified by Glimmer3 with a raw score of 8.87. Gene function extrapolated from Cj1148 (AL111168.1) after blastn alignment (93.38 percent identity over a 272 bp alignment).
  
    0.464
EFC32769.1
Oxidoreductase, short chain dehydrogenase/reductase family; C414_000220020 identified by Glimmer3 with a raw score of 12.30. Gene function extrapolated from JJD26997_1181 (CP000768.1) after blastn alignment (91.33 percent identity over a 750 bp alignment); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.430
Your Current Organism:
Campylobacter jejuni 414
NCBI taxonomy Id: 683083
Other names: C. jejuni subsp. jejuni 414, Campylobacter jejuni subsp. jejuni 414, Campylobacter jejuni subsp. jejuni str. 414, Campylobacter jejuni subsp. jejuni strain 414
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.