STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFC32534.1Multidrug resistance protein, SMR family; C414_000250017 identified by Glimmer3 with a raw score of 12.60. Gene function extrapolated from CJE1307 (CP000025.1) after blastn alignment (93.41 percent identity over a 167 bp alignment); overlaps another CDS with the same product name. (113 aa)    
Predicted Functional Partners:
EFC32535.1
Multidrug resistance protein, SMR family; C414_000250018 identified by Glimmer3 with a raw score of 9.00. Gene function extrapolated from JJD26997_0555 (CP000768.1) after blastn alignment (94.38 percent identity over a 160 bp alignment); overlaps another CDS with the same product name.
 
     0.957
EFC32533.1
Hypothetical protein; C414_000250016 identified by Glimmer3 with a raw score of 13.51. Gene function extrapolated from C8J_1116 (CP000814.1) after blastn alignment (94.04 percent identity over a 654 bp alignment).
       0.521
EFC32532.1
Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
       0.520
Your Current Organism:
Campylobacter jejuni 414
NCBI taxonomy Id: 683083
Other names: C. jejuni subsp. jejuni 414, Campylobacter jejuni subsp. jejuni 414, Campylobacter jejuni subsp. jejuni str. 414, Campylobacter jejuni subsp. jejuni strain 414
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