STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fur-2Transcriptional regulator, Fur family; C414_000430000 identified by Glimmer3 with a raw score of 10.08. Gene function extrapolated from JJD26997_1641 (CP000768.1) after blastn alignment (92.46 percent identity over a 411 bp alignment); Belongs to the Fur family. (136 aa)    
Predicted Functional Partners:
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.856
rpoB
DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.856
EFC32169.1
Alkyl hydroperoxide reductase; C414_000420103 identified by Glimmer3 with a raw score of 13.46. Gene function extrapolated from C8J_0311 (CP000814.1) after blastn alignment (95.14 percent identity over a 597 bp alignment).
  
  
 0.716
rpoA
DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.691
EFC32009.1
Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
     
 0.650
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
       0.641
EFC32007.1
Putative flagellar assembly protein; C414_000430002 identified by Glimmer3 with a raw score of 13.63. Gene function extrapolated from C8J_0297 (CP000814.1) after blastn alignment (93.44 percent identity over a 610 bp alignment).
       0.641
EFC32008.1
Flagellar motor switch protein; C414_000430003 identified by Glimmer3 with a raw score of 14.47. Gene function extrapolated from C8J_0296 (CP000814.1) after blastn alignment (92.52 percent identity over a 1029 bp alignment).
       0.641
EFC32766.1
CoA-binding domain protein; C414_000220016 identified by Glimmer3 with a raw score of 8.45. Gene function extrapolated from JJD26997_1185 (CP000768.1) after blastn alignment (93.75 percent identity over a 112 bp alignment).
 
    0.620
EFC32011.1
Chorismate mutase/prephenate dehydratase; C414_000430007 identified by Glimmer3 with a raw score of 12.00. Gene function extrapolated from CJE0361 (CP000025.1) after blastn alignment (94.49 percent identity over a 1070 bp alignment).
       0.582
Your Current Organism:
Campylobacter jejuni 414
NCBI taxonomy Id: 683083
Other names: C. jejuni subsp. jejuni 414, Campylobacter jejuni subsp. jejuni 414, Campylobacter jejuni subsp. jejuni str. 414, Campylobacter jejuni subsp. jejuni strain 414
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.