STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ28082.1Helix-turn-helix. (161 aa)    
Predicted Functional Partners:
SHJ76683.1
Smr domain-containing protein.
  
     0.594
SHJ29733.1
Hypothetical protein; Non-canonical start codon; manually curated.
  
     0.576
SHI89848.1
Protein involved in gliding motility GldH.
  
     0.558
SHJ28049.1
Zinc carboxypeptidase.
 
     0.511
SHJ28244.1
UvrD-like helicase C-terminal domain-containing protein.
  
     0.507
SHJ68219.1
Hypothetical protein.
  
     0.485
SHJ74903.1
Hypothetical protein.
  
     0.480
SHJ75875.1
Hypothetical protein.
  
     0.480
SHI89219.1
Sporulation related domain-containing protein.
  
     0.479
SHJ67059.1
Hypothetical protein.
  
     0.475
Your Current Organism:
Flavobacterium haoranii
NCBI taxonomy Id: 683124
Other names: ACCC 05409, DSM 22807, F. haoranii, Flavobacterium haoranii Zhang et al. 2010 emend. Sheu et al. 2013, Flavobacterium sp. LQY-7, KCTC 23008, strain LQY-7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.