STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS49552.1TonB-linked outer membrane protein, SusC/RagA family. (1079 aa)    
Predicted Functional Partners:
SFS49568.1
Starch-binding associating with outer membrane.
 
     0.941
SFS49531.1
Hypothetical protein.
 
     0.799
SFS72924.1
Starch-binding associating with outer membrane.
  
     0.774
SFS98023.1
Starch-binding associating with outer membrane.
  
     0.773
SFS38723.1
Starch-binding associating with outer membrane.
  
     0.769
SFS61188.1
Starch-binding associating with outer membrane.
  
     0.763
SFS37463.1
Starch-binding associating with outer membrane.
  
     0.757
SFS86145.1
SusD family protein.
  
     0.719
SFS53020.1
Hypothetical protein.
  
    0.683
SFS62111.1
SusD family protein.
  
     0.678
Your Current Organism:
Sphingobacterium wenxiniae
NCBI taxonomy Id: 683125
Other names: ACCC 05410, CCTCC AB 2010005, DSM 22789, KCTC 23009, S. wenxiniae, Sphingobacterium sp. LQY-18, Sphingobacterium wenxiniae Zhang et al. 2012, strain LQY-18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.