STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_02132Uncharacterized protein. (357 aa)    
Predicted Functional Partners:
TCAL_04879
TrmE-type G domain-containing protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
 0.946
TCAL_09099
GIDA_assoc domain-containing protein.
  
 0.937
TCAL_01482
RING-type domain-containing protein.
  
 0.873
TCAL_00252
Uncharacterized protein.
  
 0.873
TCAL_09127
Uncharacterized protein.
  
 0.873
TCAL_04140
Flavokinase domain-containing protein.
  
 
  0.827
TCAL_10610
Aminotran_5 domain-containing protein.
  
 
 0.791
TCAL_11069
Uncharacterized protein.
  
 
 0.738
TCAL_08189
DAO domain-containing protein.
  
 
 0.738
TCAL_05776
DAO domain-containing protein.
  
 
 0.738
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.