STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_05734Nudix hydrolase domain-containing protein; Belongs to the Nudix hydrolase family. (302 aa)    
Predicted Functional Partners:
TCAL_02411
Gb3_synth domain-containing protein.
 
      0.543
TCAL_11166
Nudix hydrolase domain-containing protein.
      
0.452
TCAL_02979
Uncharacterized protein.
      
 0.418
TCAL_00037
Nudix hydrolase domain-containing protein.
      
 0.416
TCAL_04148
Nudix hydrolase domain-containing protein.
      
 0.414
TCAL_06590
EamA domain-containing protein.
      
 0.407
TCAL_04646
Nudix hydrolase domain-containing protein.
      
 0.406
TCAL_05611
BHLH domain-containing protein.
      
 0.406
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.