STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_07863FCP1 homology domain-containing protein. (370 aa)    
Predicted Functional Partners:
TCAL_08986
Uncharacterized protein.
 
      0.894
TCAL_09818
Uncharacterized protein.
    
 0.786
TCAL_09993
Uncharacterized protein.
    
 0.723
TCAL_06459
General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.
    
 0.708
TCAL_12750
Glutathione peroxidase; Belongs to the glutathione peroxidase family.
   
 0.702
TCAL_10203
RPOL4c domain-containing protein.
    
 0.700
TCAL_13304
Uncharacterized protein.
    
 0.693
TCAL_10318
RNA_pol_L_2 domain-containing protein.
    
 0.660
TCAL_11186
LNS2 domain-containing protein.
    
 0.659
TCAL_09171
LNS2 domain-containing protein.
    
 0.659
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.