STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_13903Uncharacterized protein; Belongs to the RNR ribonuclease family. (984 aa)    
Predicted Functional Partners:
TCAL_00403
Uncharacterized protein.
   
 0.993
TCAL_04908
S1 motif domain-containing protein.
   
 0.988
TCAL_09684
KH_dom_type_1 domain-containing protein.
   
 0.985
TCAL_09194
S1 motif domain-containing protein.
   
 0.985
TCAL_00612
Uncharacterized protein.
   
 0.984
TCAL_06602
RNase_PH domain-containing protein.
   
 0.980
TCAL_04901
Uncharacterized protein.
   
 0.979
TCAL_06861
Uncharacterized protein.
   
 0.979
TCAL_13629
RNase_PH domain-containing protein.
   
 0.977
TCAL_00405
Uncharacterized protein.
   
 0.976
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.