STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_11662Exonuclease domain-containing protein. (195 aa)    
Predicted Functional Partners:
TCAL_02642
SLBP_RNA_bind domain-containing protein.
   
 
 0.856
TCAL_06602
RNase_PH domain-containing protein.
   
 0.687
TCAL_00305
Uncharacterized protein.
    
 
 0.663
TCAL_06868
Uncharacterized protein.
    
 
 0.660
TCAL_06861
Uncharacterized protein.
   
 0.635
TCAL_13629
RNase_PH domain-containing protein.
   
 0.635
TCAL_02552
Uncharacterized protein.
    
 
 0.598
TCAL_10094
Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.
    
 
 0.598
TCAL_02909
Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.
     
 0.597
TCAL_00790
Ribosomal_L7Ae domain-containing protein.
     
 0.584
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.