STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_08196Uncharacterized protein. (203 aa)    
Predicted Functional Partners:
TCAL_00158
Protein MAK16 homolog; Belongs to the MAK16 family.
   
  
 0.718
TCAL_02080
SURF6 domain-containing protein.
   
   0.698
TCAL_00355
PUA domain-containing protein.
   
   0.664
TCAL_10811
Fcf2 domain-containing protein.
   
  
 0.623
TCAL_04538
Uncharacterized protein.
   
    0.589
TCAL_06166
FDX-ACB domain-containing protein.
   
  
 0.573
TCAL_06406
CBF domain-containing protein.
   
   0.521
TCAL_06672
Uncharacterized protein.
   
   0.519
TCAL_12049
Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.
   
   0.508
TCAL_16850
NUC153 domain-containing protein.
   
 
 0.491
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.