STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_03592Uncharacterized protein. (887 aa)    
Predicted Functional Partners:
TCAL_08454
Uncharacterized protein.
   
 
 0.998
TCAL_07713
Bms1-type G domain-containing protein.
   
 
 0.997
TCAL_01218
Brix domain-containing protein.
   
   0.992
TCAL_03594
Uncharacterized protein.
   
 
 0.976
TCAL_15309
Uncharacterized protein.
   
 
 0.968
TCAL_00320
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
  
 0.967
TCAL_04035
RNA helicase.
   
 
 0.967
TCAL_11652
Uncharacterized protein.
   
   0.966
TCAL_11091
Uncharacterized protein.
   
   0.965
TCAL_10388
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily.
   
   0.964
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.