STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_03656AAA domain-containing protein; Belongs to the AAA ATPase family. (484 aa)    
Predicted Functional Partners:
TCAL_04831
UBX domain-containing protein.
   
 0.972
TCAL_00609
HORMA domain-containing protein.
   
 
 0.955
CYC1
Cytochrome c1.
 
    
 0.905
TCAL_08671
Non-specific serine/threonine protein kinase.
   
  
 0.897
TCAL_07715
HORMA domain-containing protein.
    
 
 0.896
TCAL_00424
TPR_REGION domain-containing protein.
  
  
 0.831
TCAL_09856
Uncharacterized protein; Belongs to the RecA family.
  
 
 0.785
MCM7
DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]
   
 
 0.779
TCAL_01185
MPN domain-containing protein.
    
 0.767
TCAL_11090
Uncharacterized protein.
    
 0.764
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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