STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_00842Uncharacterized protein. (817 aa)    
Predicted Functional Partners:
TCAL_03578
Uncharacterized protein.
    
 0.970
TCAL_09519
DUF3677 domain-containing protein.
    
  0.952
TCAL_01439
Uncharacterized protein.
    
  0.949
TCAL_06524
Uncharacterized protein.
    
 
 0.906
TCAL_03963
Beta-Casp domain-containing protein.
    
 0.764
TCAL_10092
Uncharacterized protein.
   
 0.759
TCAL_00974
Uncharacterized protein.
     
 0.691
TCAL_05451
PHD-type domain-containing protein.
   
 
  0.676
TCAL_00459
Uncharacterized protein.
   
 
  0.675
TCAL_00669
Uncharacterized protein.
     
 0.670
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.