STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_07162USP domain-containing protein; Belongs to the peptidase C19 family. (1327 aa)    
Predicted Functional Partners:
TCAL_06351
Ribosomal_S27 domain-containing protein.
    
 0.885
TCAL_02494
Ubiquitinyl hydrolase 1.
   
 
 0.818
TCAL_13856
Uncharacterized protein; Belongs to the peptidase C19 family.
   
0.809
TCAL_01352
Uncharacterized protein.
    
 0.771
TCAL_06498
Uncharacterized protein.
   
 0.751
TCAL_09825
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.746
TCAL_03055
Uncharacterized protein.
   
 
 0.736
TCAL_06890
Peptidylprolyl isomerase.
    
 0.725
TCAL_05760
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.704
TCAL_00811
Uncharacterized protein.
    
 0.699
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.