STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_06863Chitin-binding type-4 domain-containing protein. (766 aa)    
Predicted Functional Partners:
TCAL_09825
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.919
TCAL_06066
Uncharacterized protein.
    
 0.641
TCAL_12934
Uncharacterized protein.
    
 0.631
TCAL_04081
Uncharacterized protein.
    
 0.546
TCAL_10772
Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.
    
 0.545
TCAL_13107
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
   
   0.525
TCAL_12374
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 
 0.522
TCAL_07785
Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.
   
 
 0.518
TCAL_16552
Uncharacterized protein.
   
   0.516
TCAL_03211
Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.
   
   0.516
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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