STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_05594AAA domain-containing protein; Belongs to the AAA ATPase family. (352 aa)    
Predicted Functional Partners:
TCAL_04831
UBX domain-containing protein.
   
 0.972
TCAL_14161
Prot_ATP_ID_OB domain-containing protein.
 
  0.951
P5CS
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
    
 0.862
TCAL_15218
Uncharacterized protein.
    
 0.826
TCAL_07142
DUF4097 domain-containing protein.
    
 0.807
TCAL_10333
Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
    
 0.806
TCAL_04000
SH3 domain-containing protein.
    
 0.806
TCAL_01185
MPN domain-containing protein.
   
 0.770
TCAL_11090
Uncharacterized protein.
   
 0.770
TCAL_07574
Uncharacterized protein.
    
 0.763
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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