Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_07691Uncharacterized protein. (1172 aa)    
Predicted Functional Partners:
TCAL_01790
Uncharacterized protein.
   
 0.984
TCAL_04459
DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. Belongs to the RecA family. RAD51 subfamily.
   
 0.972
TCAL_06853
Uncharacterized protein.
    
 
 0.971
TCAL_10203
RPOL4c domain-containing protein.
    
 
 0.971
TCAL_01288
RAI1 domain-containing protein.
    
   0.926
TCAL_09226
Uncharacterized protein.
   
 0.925
TCAL_00358
Uncharacterized protein.
    
   0.919
TCAL_08212
Uncharacterized protein.
    
   0.898
TCAL_01883
ERCC4 domain-containing protein.
    
 0.894
TCAL_01841
Uncharacterized protein.
   
 0.890
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
Server load: low (12%) [HD]