TCAL_02074 protein (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TCAL_02074

Protein kish; Involved in the early part of the secretory pathway. (73 aa)

Predicted Functional Partners:

TCAL_14852

0.800

TCAL_07111

0.772

TCAL_06784

0.608

TCAL_02795

0.546

TCAL_15633

0.531

TCAL_07572

0.497

TCAL_01228

0.486

TCAL_04537

0.432

TCAL_01758

0.430

TCAL_03703

0.424

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_01228	TCAL_02074	A0A553NXK2	A0A553NEW8	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	Protein kish; Involved in the early part of the secretory pathway.	0.486
TCAL_01228	TCAL_03703	A0A553NXK2	A0A553N9N8	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.558
TCAL_01228	TCAL_04537	A0A553NXK2	A0A553PAW6	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	Small nuclear ribonucleoprotein G.	0.675
TCAL_01228	TCAL_07111	A0A553NXK2	A0A553PAV3	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	DNA_binding_1 domain-containing protein.	0.931
TCAL_01228	TCAL_14852	A0A553NXK2	A0A553P2J0	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	Uncharacterized protein.	0.774
TCAL_01758	TCAL_02074	A0A553N7J6	A0A553NEW8	Uncharacterized protein.	Protein kish; Involved in the early part of the secretory pathway.	0.430
TCAL_01758	TCAL_04537	A0A553N7J6	A0A553PAW6	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.488
TCAL_02074	TCAL_01228	A0A553NEW8	A0A553NXK2	Protein kish; Involved in the early part of the secretory pathway.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.486
TCAL_02074	TCAL_01758	A0A553NEW8	A0A553N7J6	Protein kish; Involved in the early part of the secretory pathway.	Uncharacterized protein.	0.430
TCAL_02074	TCAL_02795	A0A553NEW8	A0A553NZM7	Protein kish; Involved in the early part of the secretory pathway.	Uncharacterized protein.	0.546
TCAL_02074	TCAL_03703	A0A553NEW8	A0A553N9N8	Protein kish; Involved in the early part of the secretory pathway.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.424
TCAL_02074	TCAL_04537	A0A553NEW8	A0A553PAW6	Protein kish; Involved in the early part of the secretory pathway.	Small nuclear ribonucleoprotein G.	0.432
TCAL_02074	TCAL_06784	A0A553NEW8	A0A553PP59	Protein kish; Involved in the early part of the secretory pathway.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.608
TCAL_02074	TCAL_07111	A0A553NEW8	A0A553PAV3	Protein kish; Involved in the early part of the secretory pathway.	DNA_binding_1 domain-containing protein.	0.772
TCAL_02074	TCAL_07572	A0A553NEW8	A0A553PKF0	Protein kish; Involved in the early part of the secretory pathway.	Uncharacterized protein.	0.497
TCAL_02074	TCAL_14852	A0A553NEW8	A0A553P2J0	Protein kish; Involved in the early part of the secretory pathway.	Uncharacterized protein.	0.800
TCAL_02074	TCAL_15633	A0A553NEW8	A0A553PAL2	Protein kish; Involved in the early part of the secretory pathway.	SCP2 domain-containing protein.	0.531
TCAL_02795	TCAL_02074	A0A553NZM7	A0A553NEW8	Uncharacterized protein.	Protein kish; Involved in the early part of the secretory pathway.	0.546
TCAL_03703	TCAL_01228	A0A553N9N8	A0A553NXK2	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.558
TCAL_03703	TCAL_02074	A0A553N9N8	A0A553NEW8	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	Protein kish; Involved in the early part of the secretory pathway.	0.424