STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_10882t-SNARE coiled-coil homology domain-containing protein. (110 aa)    
Predicted Functional Partners:
TCAL_09256
Uncharacterized protein; Belongs to the synaptobrevin family.
    
 0.999
TCAL_10134
Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
   
 0.999
TCAL_09915
Uncharacterized protein.
    
 0.999
TCAL_11340
t-SNARE coiled-coil homology domain-containing protein.
   
 0.999
TCAL_06784
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.999
TCAL_07597
Uncharacterized protein; Belongs to the synaptobrevin family.
   
 0.998
TCAL_01726
Uso1_p115_head domain-containing protein.
    
 0.988
TCAL_14377
Uncharacterized protein.
    
 0.973
TCAL_07574
Uncharacterized protein.
    
 0.961
TCAL_06175
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
    
 0.914
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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