STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_11137Uncharacterized protein. (473 aa)    
Predicted Functional Partners:
TCAL_07735
Uncharacterized protein.
    
 0.999
TCAL_03748
Nudix hydrolase domain-containing protein.
  
 0.984
TCAL_12563
mRNA_decap_C domain-containing protein.
   
 0.983
TCAL_14765
PAT1 domain-containing protein.
    
 0.983
TCAL_02384
Uncharacterized protein.
    
 
 0.958
TCAL_09094
Uncharacterized protein.
    
 
 0.920
TCAL_02461
ATP-dependent (S)-NAD(P)H-hydrate dehydratase; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ATP, which is converted to ADP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.
  
 
 0.913
TCAL_16867
5'-3' exoribonuclease 1.
   
 
 0.913
TCAL_10821
Ge1_WD40 domain-containing protein.
   
 0.902
TCAL_06947
Ge1_WD40 domain-containing protein.
   
 0.902
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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