STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_02297Smg4_UPF3 domain-containing protein. (585 aa)    
Predicted Functional Partners:
TCAL_05453
Uncharacterized protein.
   
 0.999
TCAL_04359
Uncharacterized protein.
    
 0.998
TCAL_00021
PWI domain-containing protein.
    
 0.996
TCAL_03626
Uncharacterized protein.
    
 0.992
TCAL_08371
PINc domain-containing protein.
   
 0.992
TCAL_12182
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.984
TCAL_05253
Uncharacterized protein.
   
 0.983
TCAL_03398
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.979
TCAL_04812
MI domain-containing protein.
     
 0.976
TCAL_09811
Uncharacterized protein.
    
 0.974
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.