STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_07221RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (684 aa)    
Predicted Functional Partners:
TCAL_09818
Uncharacterized protein.
   
 0.996
TCAL_09921
Uncharacterized protein.
   
 0.981
TCAL_10880
Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.
     
 0.975
TCAL_06853
Uncharacterized protein.
    
 0.973
TCAL_06404
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.971
TCAL_05572
RPOLD domain-containing protein.
    
 0.970
TCAL_03226
TFIIS N-terminal domain-containing protein.
   
 0.967
TCAL_12187
EAF domain-containing protein.
   
 
  0.962
TCAL_06459
General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.
    
 0.959
TCAL_10203
RPOL4c domain-containing protein.
    
 0.935
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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