STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_03248SpoU_sub_bind domain-containing protein. (455 aa)    
Predicted Functional Partners:
TCAL_04707
TPT domain-containing protein.
   
  
 0.524
TCAL_10777
Uncharacterized protein.
   
 
 0.513
TCAL_08454
Uncharacterized protein.
 
 
    0.493
TCAL_06265
Uncharacterized protein; Belongs to the peptidase M24B family.
  
 
  0.454
TCAL_07731
Uncharacterized protein; Belongs to the peptidase M24B family.
  
 
  0.454
TCAL_05793
Uncharacterized protein; Belongs to the peptidase M24B family.
  
 
  0.454
TCAL_05697
FAST_1 domain-containing protein.
    
  0.447
TCAL_09289
Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the peptidase M24B family.
    
  0.447
TCAL_03138
AMP_N domain-containing protein.
    
  0.447
TCAL_02931
Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family.
   
   0.440
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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