STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_12897L-type lectin-like domain-containing protein. (533 aa)    
Predicted Functional Partners:
TCAL_14427
EF-hand domain-containing protein.
   
 0.995
TCAL_05691
Uncharacterized protein.
   
 0.880
TCAL_10507
Uncharacterized protein.
   
 0.880
TCAL_06175
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 
 0.861
TCAL_07597
Uncharacterized protein; Belongs to the synaptobrevin family.
   
 0.839
TCAL_09321
WD_REPEATS_REGION domain-containing protein.
   
 
 0.832
TCAL_04166
Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.
     
 0.823
TCAL_10134
Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
     
 0.822
TCAL_11686
GOLD domain-containing protein.
   
 0.820
TCAL_00542
Protein transport protein sec16.
     
 0.807
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.