STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_03810Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy. (686 aa)    
Predicted Functional Partners:
TCAL_07954
Autophagy-related protein 3.
    
 0.999
TCAL_09633
Uncharacterized protein.
   
 0.999
TCAL_08714
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 0.998
TCAL_04466
Uncharacterized protein.
   
 0.981
TCAL_02016
Autophagy protein 5; Involved in autophagic vesicle formation.
    
 0.939
TCAL_14939
Autophagy_act_C domain-containing protein.
   
 0.913
TCAL_00138
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.888
TCAL_03563
WD_REPEATS_REGION domain-containing protein.
     
 0.874
TCAL_09263
Molybdopterin synthase catalytic subunit; Catalytic subunit of the molybdopterin synthase complex, a complex that catalyzes the conversion of precursor Z into molybdopterin. Acts by mediating the incorporation of 2 sulfur atoms from thiocarboxylated MOCS2A into precursor Z to generate a dithiolene group.
  
 0.819
TCAL_14319
E2_bind domain-containing protein.
    
 0.801
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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