STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_01208Uncharacterized protein. (94 aa)    
Predicted Functional Partners:
TCAL_07111
DNA_binding_1 domain-containing protein.
    
 0.998
TCAL_07211
Uncharacterized protein.
    
 0.996
TCAL_08550
Kri1_C domain-containing protein.
    
  0.967
TCAL_14852
Uncharacterized protein.
    
  0.946
TCAL_06187
Alba domain-containing protein.
    
  0.792
TCAL_05117
Uncharacterized protein.
    
  0.792
TCAL_02105
Ribosomal_L7Ae domain-containing protein.
    
  0.735
TCAL_00804
Ribosomal_L7Ae domain-containing protein.
    
 0.735
TCAL_01228
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
    
  0.735
TCAL_03549
WSC domain-containing protein.
    
 0.615
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.