TCAL_17332 protein (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TCAL_17332

Uncharacterized protein. (112 aa)

Predicted Functional Partners:

TCAL_09825

0.999

TCAL_06937

0.996

TCAL_05421

0.996

TCAL_02130

0.995

TCAL_13152

0.995

TCAL_00790

0.995

TCAL_02105

0.995

TCAL_04899

0.995

TCAL_05248

0.995

TCAL_15077

0.995

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00790	TCAL_02105	A0A553NC93	A0A553ND46	Ribosomal_L7Ae domain-containing protein.	Ribosomal_L7Ae domain-containing protein.	0.999
TCAL_00790	TCAL_02130	A0A553NC93	A0A553N6A6	Ribosomal_L7Ae domain-containing protein.	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	0.999
TCAL_00790	TCAL_04899	A0A553NC93	A0A553NDP0	Ribosomal_L7Ae domain-containing protein.	Ribosomal_L18_c domain-containing protein.	0.999
TCAL_00790	TCAL_05248	A0A553NC93	A0A553NPS7	Ribosomal_L7Ae domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.999
TCAL_00790	TCAL_05421	A0A553NC93	A0A553NXA4	Ribosomal_L7Ae domain-containing protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
TCAL_00790	TCAL_06937	A0A553NC93	A0A553NT51	Ribosomal_L7Ae domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.999
TCAL_00790	TCAL_09825	A0A553NC93	A0A553PNW5	Ribosomal_L7Ae domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
TCAL_00790	TCAL_13152	A0A553NC93	A0A553N855	Ribosomal_L7Ae domain-containing protein.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
TCAL_00790	TCAL_15077	A0A553NC93	A0A553NTV5	Ribosomal_L7Ae domain-containing protein.	Uncharacterized protein.	0.999
TCAL_00790	TCAL_17332	A0A553NC93	A0A553NYF7	Ribosomal_L7Ae domain-containing protein.	Uncharacterized protein.	0.995
TCAL_02105	TCAL_00790	A0A553ND46	A0A553NC93	Ribosomal_L7Ae domain-containing protein.	Ribosomal_L7Ae domain-containing protein.	0.999
TCAL_02105	TCAL_02130	A0A553ND46	A0A553N6A6	Ribosomal_L7Ae domain-containing protein.	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	0.999
TCAL_02105	TCAL_04899	A0A553ND46	A0A553NDP0	Ribosomal_L7Ae domain-containing protein.	Ribosomal_L18_c domain-containing protein.	0.999
TCAL_02105	TCAL_05248	A0A553ND46	A0A553NPS7	Ribosomal_L7Ae domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.999
TCAL_02105	TCAL_05421	A0A553ND46	A0A553NXA4	Ribosomal_L7Ae domain-containing protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
TCAL_02105	TCAL_06937	A0A553ND46	A0A553NT51	Ribosomal_L7Ae domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.999
TCAL_02105	TCAL_09825	A0A553ND46	A0A553PNW5	Ribosomal_L7Ae domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
TCAL_02105	TCAL_13152	A0A553ND46	A0A553N855	Ribosomal_L7Ae domain-containing protein.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
TCAL_02105	TCAL_15077	A0A553ND46	A0A553NTV5	Ribosomal_L7Ae domain-containing protein.	Uncharacterized protein.	0.999
TCAL_02105	TCAL_17332	A0A553ND46	A0A553NYF7	Ribosomal_L7Ae domain-containing protein.	Uncharacterized protein.	0.995