STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_05436THUMP domain-containing protein. (427 aa)    
Predicted Functional Partners:
TCAL_16553
C2H2-type domain-containing protein.
    
 0.752
TCAL_06068
Uncharacterized protein.
    
 0.752
TCAL_09657
tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...]
    
   0.709
TCAL_11131
Uncharacterized protein.
   
 0.670
TCAL_10039
Uncharacterized protein.
   
 0.670
TCAL_05619
F-BAR domain-containing protein.
    
 0.562
TCAL_11376
MHD domain-containing protein.
    
 0.562
TCAL_02794
SH3 domain-containing protein.
    
 
 0.543
TCAL_11384
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
  0.541
TCAL_03126
Non-specific serine/threonine protein kinase.
    
  0.541
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.