STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_02846PHD-type domain-containing protein. (675 aa)    
Predicted Functional Partners:
TCAL_01562
B30.2/SPRY domain-containing protein.
   
 0.996
TCAL_01942
WD_REPEATS_REGION domain-containing protein.
    
 0.995
TCAL_08908
Uncharacterized protein.
   
 
 0.993
TCAL_01057
WD_REPEATS_REGION domain-containing protein.
    
 0.979
TCAL_04364
WD_REPEATS_REGION domain-containing protein.
    
 
 0.901
TCAL_08195
WD_REPEATS_REGION domain-containing protein.
    
 
 0.883
TCAL_04150
Uncharacterized protein; Belongs to the actin family.
    
 
 0.839
TCAL_05101
Uncharacterized protein.
    
 
 0.838
TCAL_12206
SWIB domain-containing protein.
   
 
 0.830
TCAL_06351
Ribosomal_S27 domain-containing protein.
    
 
 0.804
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.