STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_07525PKS_ER domain-containing protein. (337 aa)    
Predicted Functional Partners:
TCAL_00541
Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
  
  
 0.442
TCAL_02765
Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.
   
 
 0.419
TCAL_05074
Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.
   
 
 0.419
TCAL_04840
Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.
   
 
 0.419
TCAL_03960
Uncharacterized protein; Belongs to the aldehyde dehydrogenase family.
   
 
 0.419
TCAL_13418
Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.
   
 
 0.419
TCAL_11399
PX domain-containing protein; Belongs to the aldehyde dehydrogenase family.
   
 
 0.419
TCAL_06953
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 
 0.419
TCAL_13805
Uncharacterized protein; Belongs to the aldehyde dehydrogenase family.
   
 
 0.419
TCAL_01748
Uncharacterized protein.
   
 
 0.419
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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