TCAL_01099 protein (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TCAL_01099

Uncharacterized protein. (402 aa)

Predicted Functional Partners:

TCAL_10350

0.637

TCAL_06066

0.624

TCAL_02042

0.505

TCAL_09745

0.504

TCAL_08768

0.473

TCAL_16645

0.470

TCAL_06351

0.470

TCAL_03980

0.467

TCAL_01864

0.467

TCAL_10898

0.463

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_01099	TCAL_01864	A0A553P1P7	A0A553P7F7	Uncharacterized protein.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.	0.467
TCAL_01099	TCAL_02042	A0A553P1P7	A0A553NDZ5	Uncharacterized protein.	Uncharacterized protein.	0.505
TCAL_01099	TCAL_03980	A0A553P1P7	A0A553NBL7	Uncharacterized protein.	Uncharacterized protein.	0.467
TCAL_01099	TCAL_06066	A0A553P1P7	A0A553PQ43	Uncharacterized protein.	Uncharacterized protein.	0.624
TCAL_01099	TCAL_06351	A0A553P1P7	A0A553PAA4	Uncharacterized protein.	Ribosomal_S27 domain-containing protein.	0.470
TCAL_01099	TCAL_08768	A0A553P1P7	A0A553PKQ9	Uncharacterized protein.	Uncharacterized protein.	0.473
TCAL_01099	TCAL_09745	A0A553P1P7	A0A553PA58	Uncharacterized protein.	Uncharacterized protein.	0.504
TCAL_01099	TCAL_10350	A0A553P1P7	A0A553NCS1	Uncharacterized protein.	Uncharacterized protein.	0.637
TCAL_01099	TCAL_10898	A0A553P1P7	A0A553NC86	Uncharacterized protein.	Uncharacterized protein.	0.463
TCAL_01099	TCAL_16645	A0A553P1P7	A0A553NDR3	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.470
TCAL_01864	TCAL_01099	A0A553P7F7	A0A553P1P7	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.	Uncharacterized protein.	0.467
TCAL_01864	TCAL_06351	A0A553P7F7	A0A553PAA4	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.	Ribosomal_S27 domain-containing protein.	0.498
TCAL_01864	TCAL_09745	A0A553P7F7	A0A553PA58	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.	Uncharacterized protein.	0.683
TCAL_02042	TCAL_01099	A0A553NDZ5	A0A553P1P7	Uncharacterized protein.	Uncharacterized protein.	0.505
TCAL_02042	TCAL_16645	A0A553NDZ5	A0A553NDR3	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.859
TCAL_03980	TCAL_01099	A0A553NBL7	A0A553P1P7	Uncharacterized protein.	Uncharacterized protein.	0.467
TCAL_03980	TCAL_06351	A0A553NBL7	A0A553PAA4	Uncharacterized protein.	Ribosomal_S27 domain-containing protein.	0.811
TCAL_03980	TCAL_10898	A0A553NBL7	A0A553NC86	Uncharacterized protein.	Uncharacterized protein.	0.997
TCAL_06066	TCAL_01099	A0A553PQ43	A0A553P1P7	Uncharacterized protein.	Uncharacterized protein.	0.624
TCAL_06066	TCAL_06351	A0A553PQ43	A0A553PAA4	Uncharacterized protein.	Ribosomal_S27 domain-containing protein.	0.984