STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_03122Uncharacterized protein. (393 aa)    
Predicted Functional Partners:
TCAL_05697
FAST_1 domain-containing protein.
    
  0.447
TCAL_06265
Uncharacterized protein; Belongs to the peptidase M24B family.
    
  0.447
TCAL_09289
Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the peptidase M24B family.
    
  0.447
TCAL_03138
AMP_N domain-containing protein.
    
  0.447
TCAL_07731
Uncharacterized protein; Belongs to the peptidase M24B family.
    
  0.447
TCAL_05793
Uncharacterized protein; Belongs to the peptidase M24B family.
    
  0.447
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.