STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_01051MFS domain-containing protein. (565 aa)    
Predicted Functional Partners:
TCAL_13566
Phospholipase A2.
    
 0.666
TCAL_03963
Beta-Casp domain-containing protein.
    
 0.566
TCAL_09519
DUF3677 domain-containing protein.
    
 0.563
TCAL_10092
Uncharacterized protein.
    
 0.561
TCAL_00499
Uncharacterized protein.
    
 0.556
TCAL_03578
Uncharacterized protein.
    
 0.553
TCAL_00974
Uncharacterized protein.
    
 0.552
TCAL_07452
Uncharacterized protein.
    
  0.543
TCAL_00842
Uncharacterized protein.
    
  0.531
TCAL_06404
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.489
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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