STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_03409ANK_REP_REGION domain-containing protein. (405 aa)    
Predicted Functional Partners:
TCAL_06066
Uncharacterized protein.
   
 0.695
TCAL_10010
Nipped-B protein.
   
    0.653
TCAL_13008
IFT81_CH domain-containing protein.
    
 0.627
TCAL_03504
Uncharacterized protein.
   
 0.626
TCAL_03505
Uncharacterized protein.
   
 0.626
TCAL_04803
Uncharacterized protein.
    
  0.617
TCAL_06313
Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 0.613
TCAL_10825
Uncharacterized protein.
   
   0.611
TCAL_00545
Uncharacterized protein.
   
   0.611
TCAL_00829
Ubiquitin carboxyl-terminal hydrolase.
    
  0.607
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.