STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_00298C1q domain-containing protein. (425 aa)    
Predicted Functional Partners:
TCAL_10350
Uncharacterized protein.
    
 0.794
TCAL_04081
Uncharacterized protein.
    
 0.616
TCAL_06066
Uncharacterized protein.
    
 0.615
TCAL_09221
Uncharacterized protein.
    
  0.551
TCAL_04803
Uncharacterized protein.
    
 0.524
TCAL_00730
WD_REPEATS_REGION domain-containing protein.
    
  0.498
TCAL_06351
Ribosomal_S27 domain-containing protein.
    
  0.479
TCAL_14306
POT1PC domain-containing protein.
    
  0.473
TCAL_12356
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
  0.464
TCAL_03202
Uncharacterized protein.
    
 0.430
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.