STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_00195AMP-binding domain-containing protein. (673 aa)    
Predicted Functional Partners:
TCAL_06066
Uncharacterized protein.
    
 0.780
TCAL_02254
Uncharacterized protein; Belongs to the carnitine/choline acetyltransferase family.
     
 0.770
TCAL_02920
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
  
 0.754
TCAL_01788
P53 domain-containing protein.
    
 0.730
TCAL_06431
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.728
TCAL_00345
MaoC-like domain-containing protein.
  
 
 0.703
TCAL_15633
SCP2 domain-containing protein.
  
 0.685
TCAL_13856
Uncharacterized protein; Belongs to the peptidase C19 family.
    
 0.640
TCAL_06351
Ribosomal_S27 domain-containing protein.
    
 0.631
TCAL_01153
Uncharacterized protein.
     
 0.627
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.