STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_00942HTH La-type RNA-binding domain-containing protein. (933 aa)    
Predicted Functional Partners:
TCAL_09964
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 
 0.782
TCAL_00355
PUA domain-containing protein.
   
 
 0.702
TCAL_14423
SH3 domain-containing protein.
    
 
 0.690
TCAL_11380
Uncharacterized protein.
   
 
 0.667
TCAL_06612
Uncharacterized protein.
   
 
 0.666
TCAL_12018
Uncharacterized protein.
   
 
 0.649
TCAL_01073
RRM domain-containing protein.
   
 
 0.611
TCAL_09597
PUM-HD domain-containing protein.
   
 
 0.600
TCAL_08738
Uncharacterized protein.
   
 
 0.599
TCAL_14546
Uncharacterized protein.
   
 
 0.599
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.