STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_01907SAM domain-containing protein. (791 aa)    
Predicted Functional Partners:
TCAL_01722
Uncharacterized protein.
    
 0.965
TCAL_07013
RING-type domain-containing protein.
    
 0.925
TCAL_09679
RanBP2-type domain-containing protein.
    
 0.915
TCAL_15270
Chromo domain-containing protein.
    
 0.858
TCAL_11117
E2F_TDP domain-containing protein.
   
 0.831
TCAL_05512
Chromo domain-containing protein.
    
 0.821
TCAL_04771
Chromo domain-containing protein.
    
 0.821
TCAL_05914
RING-type domain-containing protein.
    
 0.805
TCAL_02690
RING-type domain-containing protein.
   
 0.784
TCAL_12864
BHLH domain-containing protein.
    
 0.784
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.