STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_05534Arrestin_C domain-containing protein. (433 aa)    
Predicted Functional Partners:
TCAL_03457
Thioredoxin; Belongs to the thioredoxin family.
    
 0.664
TCAL_07398
Thioredoxin domain-containing protein.
    
 0.664
TCAL_00512
Thioredoxin; Belongs to the thioredoxin family.
    
 0.585
TCAL_11511
Thioredoxin domain-containing protein.
    
 0.573
TCAL_12295
Uncharacterized protein.
    
 0.573
TCAL_07575
Thioredoxin domain-containing protein.
    
 0.573
TCAL_03607
Uncharacterized protein.
    
 0.513
TCAL_08173
C2 domain-containing protein.
    
 
 0.494
TCAL_12263
E3 ubiquitin-protein ligase.
    
 
 0.465
TCAL_06772
Uncharacterized protein.
    
 
 0.465
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.