STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_04609RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (431 aa)    
Predicted Functional Partners:
TCAL_03693
Uncharacterized protein.
   
 0.999
TCAL_02448
Uncharacterized protein.
   
 0.999
TCAL_06410
Bms1-type G domain-containing protein.
   
 0.999
TCAL_09825
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.999
TCAL_06607
RIO domain-containing protein.
   
 0.999
TCAL_03694
RIO domain-containing protein.
   
 0.998
TCAL_13107
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
    
 0.997
TCAL_03598
Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.
   
 0.997
TCAL_06041
S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.
   
 0.997
TCAL_07785
Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.
   
 0.997
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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