STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_08305Uncharacterized protein. (611 aa)    
Predicted Functional Partners:
TCAL_11803
Uncharacterized protein.
   
 
 0.950
TCAL_03215
Fe2OG dioxygenase domain-containing protein.
   
 
 0.765
TCAL_09095
Uncharacterized protein.
      
 0.517
TCAL_05023
LRRcap domain-containing protein.
    
   0.497
TCAL_16648
Uncharacterized protein.
   
 
 0.487
TCAL_06761
Uncharacterized protein.
    
   0.424
TCAL_12952
Uncharacterized protein.
    
   0.405
TCAL_06004
Uncharacterized protein.
    
   0.405
TCAL_00045
SRR1 domain-containing protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.402
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.