STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCAL_12695VWFD domain-containing protein. (3910 aa)    
Predicted Functional Partners:
TCAL_12945
Vitellogenin domain-containing protein.
   
 0.872
TCAL_08745
Uncharacterized protein.
    
 0.809
TCAL_09210
Uncharacterized protein.
    
 0.798
TCAL_12975
PID domain-containing protein.
     
 0.611
TCAL_04102
HATPase_c domain-containing protein.
    
 0.578
TCAL_09500
Calreticulin.
    
 0.564
TCAL_10400
ML domain-containing protein.
     
 0.537
TCAL_02918
Protein disulfide-isomerase.
   
  0.525
TCAL_09550
Protein disulfide-isomerase.
   
  0.525
TCAL_01087
Protein disulfide-isomerase.
   
  0.525
Your Current Organism:
Tigriopus californicus
NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.