TCAL_12427 protein (Tigriopus californicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TCAL_12427

Aamy_C domain-containing protein; Belongs to the glycosyl hydrolase 13 family. (604 aa)

Predicted Functional Partners:

TCAL_08616

0.849

TCAL_10747

0.779

TCAL_10489

0.749

TCAL_14408

0.664

TCAL_00840

0.639

TCAL_00315

0.635

TCAL_07901

0.635

TCAL_00722

0.631

TCAL_03382

0.609

TCAL_06581

0.609

Your Current Organism:

Tigriopus californicus

NCBI taxonomy Id: 6832
Other names: T. californicus, tidepool copepod

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCAL_00315	TCAL_03382	A0A553NEV8	A0A553P303	Uncharacterized protein.	Glyco_transf_20 domain-containing protein.	0.794
TCAL_00315	TCAL_06581	A0A553NEV8	A0A553PPP1	Uncharacterized protein.	Glyco_transf_20 domain-containing protein.	0.794
TCAL_00315	TCAL_08616	A0A553NEV8	A0A553PLS0	Uncharacterized protein.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.849
TCAL_00315	TCAL_10489	A0A553NEV8	A0A553PS16	Uncharacterized protein.	Aamy domain-containing protein.	0.785
TCAL_00315	TCAL_12427	A0A553NEV8	A0A553PGH5	Uncharacterized protein.	Aamy_C domain-containing protein; Belongs to the glycosyl hydrolase 13 family.	0.635
TCAL_00315	TCAL_14408	A0A553NEV8	A0A553PK96	Uncharacterized protein.	Uncharacterized protein.	0.924
TCAL_00722	TCAL_00840	A0A553PCK6	A0A553NG22	Uncharacterized protein; Belongs to the phosphohexose mutase family.	Uncharacterized protein.	0.984
TCAL_00722	TCAL_03382	A0A553PCK6	A0A553P303	Uncharacterized protein; Belongs to the phosphohexose mutase family.	Glyco_transf_20 domain-containing protein.	0.609
TCAL_00722	TCAL_06581	A0A553PCK6	A0A553PPP1	Uncharacterized protein; Belongs to the phosphohexose mutase family.	Glyco_transf_20 domain-containing protein.	0.609
TCAL_00722	TCAL_08616	A0A553PCK6	A0A553PLS0	Uncharacterized protein; Belongs to the phosphohexose mutase family.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.999
TCAL_00722	TCAL_10489	A0A553PCK6	A0A553PS16	Uncharacterized protein; Belongs to the phosphohexose mutase family.	Aamy domain-containing protein.	0.995
TCAL_00722	TCAL_12427	A0A553PCK6	A0A553PGH5	Uncharacterized protein; Belongs to the phosphohexose mutase family.	Aamy_C domain-containing protein; Belongs to the glycosyl hydrolase 13 family.	0.631
TCAL_00840	TCAL_00722	A0A553NG22	A0A553PCK6	Uncharacterized protein.	Uncharacterized protein; Belongs to the phosphohexose mutase family.	0.984
TCAL_00840	TCAL_03382	A0A553NG22	A0A553P303	Uncharacterized protein.	Glyco_transf_20 domain-containing protein.	0.677
TCAL_00840	TCAL_06581	A0A553NG22	A0A553PPP1	Uncharacterized protein.	Glyco_transf_20 domain-containing protein.	0.677
TCAL_00840	TCAL_08616	A0A553NG22	A0A553PLS0	Uncharacterized protein.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.997
TCAL_00840	TCAL_10489	A0A553NG22	A0A553PS16	Uncharacterized protein.	Aamy domain-containing protein.	0.970
TCAL_00840	TCAL_10747	A0A553NG22	A0A553NTI0	Uncharacterized protein.	Gal_mutarotas_2 domain-containing protein; Belongs to the glycosyl hydrolase 31 family.	0.578
TCAL_00840	TCAL_12427	A0A553NG22	A0A553PGH5	Uncharacterized protein.	Aamy_C domain-containing protein; Belongs to the glycosyl hydrolase 13 family.	0.639
TCAL_00840	TCAL_14408	A0A553NG22	A0A553PK96	Uncharacterized protein.	Uncharacterized protein.	0.783